INFO: CPU: calc-server INFO: Crux version: 3.1-4438655b INFO: Sat Jun 9 17:07:07 MSK 2018 COMMAND LINE: crux q-ranker /home/mark/overfit_test/mzxml/olsen_100ng_30min_15k_01.mzXML /home/mark/overfit_test/comet/olsen_100ng_30min_15k_01_7.comet.target.txt --decoy-prefix DECOY_ --output-dir /home/mark/overfit_test/qranker --fileroot olsen_100ng_30min_15k_01_7 INFO: Beginning q-ranker. INFO: delmited source: /home/mark/overfit_test/comet/olsen_100ng_30min_15k_01_7.comet.target.txt INFO: ms2 source: /home/mark/overfit_test/mzxml/olsen_100ng_30min_15k_01.mzXML INFO: output_directory: /home/mark/overfit_test/qranker INFO: enzyme: trypsin INFO: decoy prefix: DECOY_ INFO: parsing files: INFO: reading file /home/mark/overfit_test/mzxml/olsen_100ng_30min_15k_01.mzXML INFO: parsing file /home/mark/overfit_test/comet/olsen_100ng_30min_15k_01_7.comet.target.txt INFO: PSM number 0 INFO: PSM number 5000 INFO: PSM number 10000 INFO: PSM number 15000 INFO: PSM number 20000 INFO: PSM number 25000 INFO: Number of spectra: 26106 INFO: Number of PSMs: total 26106 positives 21336 negatives 4770 INFO: Number of peptides: total 23665 positives 18974 negatives 4691 INFO: Number of proteins: total 11087 positives 6915 negatives 4172 INFO: reading data INFO: Before Iterating INFO: trainset 0.00:5125 0.00:7393 0.01:7983 0.01:8164 0.01:8528 0.02:9437 0.03:10068 0.04:10325 0.05:10527 0.06:10723 0.07:10897 0.08:11062 0.09:11225 0.10:11347 INFO: trainset 0.00:2082 0.00:2179 0.01:2351 0.01:2379 0.01:2557 0.02:2866 0.03:3044 0.04:3182 0.05:3255 0.06:3329 0.07:3382 0.08:3437 0.09:3484 0.10:3525 INFO: Iteration 0 : INFO: trainset 0.00:7020 0.00:8538 0.01:9504 0.01:9938 0.01:10111 0.02:10729 0.03:11023 0.04:11513 0.05:11808 0.06:11945 0.07:12107 0.08:12176 0.09:12282 0.10:12379 INFO: testset 0.00:2607 0.00:2739 0.01:2972 0.01:2986 0.01:3131 0.02:3391 0.03:3597 0.04:3672 0.05:3762 0.06:3831 0.07:3896 0.08:3918 0.09:3981 0.10:4002 INFO: Iteration 10 : INFO: trainset 0.00:7155 0.00:8688 0.01:9466 0.01:10049 0.01:10259 0.02:10797 0.03:11205 0.04:11614 0.05:11830 0.06:12027 0.07:12132 0.08:12261 0.09:12358 0.10:12446 INFO: testset 0.00:2631 0.00:2787 0.01:3078 0.01:3156 0.01:3327 0.02:3452 0.03:3580 0.04:3652 0.05:3723 0.06:3787 0.07:3841 0.08:3902 0.09:3944 0.10:3989 INFO: Iteration 20 : INFO: trainset 0.00:6690 0.00:8837 0.01:9578 0.01:9998 0.01:10276 0.02:10838 0.03:11275 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Iteration 33 : INFO: trainset 0.00:8092 0.00:8981 0.01:9735 0.01:10119 0.01:10351 0.02:10940 0.03:11404 0.04:11700 0.05:11845 0.06:11991 0.07:12123 0.08:12235 0.09:12328 0.10:12417 INFO: testset 0.00:2402 0.00:2725 0.01:2948 0.01:3356 0.01:3432 0.02:3529 0.03:3624 0.04:3692 0.05:3753 0.06:3809 0.07:3844 0.08:3888 0.09:3937 0.10:3974 INFO: Iteration 36 : INFO: trainset 0.00:8197 0.00:8878 0.01:9905 0.01:10249 0.01:10374 0.02:11018 0.03:11410 0.04:11637 0.05:11868 0.06:12027 0.07:12147 0.08:12230 0.09:12313 0.10:12387 INFO: testset 0.00:2182 0.00:2789 0.01:3058 0.01:3273 0.01:3315 0.02:3544 0.03:3627 0.04:3696 0.05:3769 0.06:3834 0.07:3852 0.08:3896 0.09:3931 0.10:3945 INFO: Iteration 39 : INFO: trainset 0.00:7868 0.00:8969 0.01:10026 0.01:10280 0.01:10441 0.02:11056 0.03:11451 0.04:11708 0.05:11871 0.06:11987 0.07:12106 0.08:12207 0.09:12315 0.10:12439 INFO: testset 0.00:2275 0.00:2755 0.01:2986 0.01:3277 0.01:3396 0.02:3533 0.03:3608 0.04:3720 0.05:3775 0.06:3817 0.07:3862 0.08:3905 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INFO: Return Code:0