INFO: CPU: calc-server INFO: Crux version: 3.1-4438655b INFO: Sat Jun 9 17:13:38 MSK 2018 COMMAND LINE: crux q-ranker /home/mark/overfit_test/mzxml/confetti_trypsin_01.mzXML /home/mark/overfit_test/comet/confetti_trypsin_01_7.comet.target.txt --decoy-prefix DECOY_ --output-dir /home/mark/overfit_test/qranker --fileroot confetti_trypsin_01_7 INFO: Beginning q-ranker. INFO: delmited source: /home/mark/overfit_test/comet/confetti_trypsin_01_7.comet.target.txt INFO: ms2 source: /home/mark/overfit_test/mzxml/confetti_trypsin_01.mzXML INFO: output_directory: /home/mark/overfit_test/qranker INFO: enzyme: trypsin INFO: decoy prefix: DECOY_ INFO: parsing files: INFO: reading file /home/mark/overfit_test/mzxml/confetti_trypsin_01.mzXML INFO: parsing file /home/mark/overfit_test/comet/confetti_trypsin_01_7.comet.target.txt INFO: PSM number 0 INFO: PSM number 5000 INFO: PSM number 10000 INFO: PSM number 15000 INFO: PSM number 20000 INFO: PSM number 25000 INFO: PSM number 30000 INFO: PSM number 35000 INFO: PSM number 40000 INFO: PSM number 45000 INFO: PSM number 50000 INFO: Number of spectra: 50695 INFO: Number of PSMs: total 50695 positives 41037 negatives 9658 INFO: Number of peptides: total 39799 positives 31412 negatives 8387 INFO: Number of proteins: total 17381 positives 10451 negatives 6930 INFO: reading data INFO: Before Iterating INFO: trainset 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INFO: Return Code:0