INFO: CPU: calc-server INFO: Crux version: 3.1-4438655b INFO: Sat Jun 9 17:09:36 MSK 2018 COMMAND LINE: crux q-ranker /home/mark/overfit_test/mzxml/20100609_Velos1_TaGe_SA_293_4.mzXML /home/mark/overfit_test/comet/20100609_Velos1_TaGe_SA_293_4_6.comet.target.txt --decoy-prefix DECOY_ --output-dir /home/mark/overfit_test/qranker --fileroot 20100609_Velos1_TaGe_SA_293_4_6 INFO: Beginning q-ranker. INFO: delmited source: /home/mark/overfit_test/comet/20100609_Velos1_TaGe_SA_293_4_6.comet.target.txt INFO: ms2 source: /home/mark/overfit_test/mzxml/20100609_Velos1_TaGe_SA_293_4.mzXML INFO: output_directory: /home/mark/overfit_test/qranker INFO: enzyme: trypsin INFO: decoy prefix: DECOY_ INFO: parsing files: INFO: reading file /home/mark/overfit_test/mzxml/20100609_Velos1_TaGe_SA_293_4.mzXML INFO: parsing file /home/mark/overfit_test/comet/20100609_Velos1_TaGe_SA_293_4_6.comet.target.txt INFO: PSM number 0 INFO: PSM number 5000 INFO: PSM number 10000 INFO: PSM number 15000 INFO: Number of spectra: 19427 INFO: Number of PSMs: total 19427 positives 16590 negatives 2837 INFO: Number of peptides: total 15676 positives 13042 negatives 2634 INFO: Number of proteins: total 8716 positives 5978 negatives 2738 INFO: reading data INFO: Before Iterating INFO: trainset 0.00:6692 0.00:7703 0.01:8226 0.01:8506 0.01:8783 0.02:9281 0.03:9508 0.04:9671 0.05:9767 0.06:9862 0.07:9979 0.08:10054 0.09:10117 0.10:10205 INFO: trainset 0.00:2511 0.00:2660 0.01:2819 0.01:2825 0.01:2874 0.02:2958 0.03:3046 0.04:3123 0.05:3148 0.06:3185 0.07:3213 0.08:3238 0.09:3258 0.10:3278 INFO: Iteration 0 : INFO: trainset 0.00:4351 0.00:8197 0.01:8885 0.01:8958 0.01:9200 0.02:9759 0.03:9982 0.04:10153 0.05:10214 0.06:10257 0.07:10348 0.08:10395 0.09:10442 0.10:10492 INFO: testset 0.00:2390 0.00:2832 0.01:2836 0.01:2908 0.01:3046 0.02:3120 0.03:3246 0.04:3269 0.05:3307 0.06:3323 0.07:3366 0.08:3387 0.09:3408 0.10:3421 INFO: Iteration 10 : INFO: trainset 0.00:5273 0.00:8023 0.01:9260 0.01:9535 0.01:9622 0.02:9951 0.03:10128 0.04:10242 0.05:10305 0.06:10373 0.07:10415 0.08:10446 0.09:10492 0.10:10528 INFO: testset 0.00:2852 0.00:2872 0.01:2995 0.01:3097 0.01:3100 0.02:3226 0.03:3284 0.04:3319 0.05:3330 0.06:3351 0.07:3362 0.08:3387 0.09:3398 0.10:3410 INFO: Iteration 20 : INFO: trainset 0.00:5009 0.00:7995 0.01:9262 0.01:9525 0.01:9672 0.02:9990 0.03:10179 0.04:10261 0.05:10320 0.06:10397 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0.01:2882 0.02:3000 0.03:3067 0.04:3113 0.05:3171 0.06:3213 0.07:3242 0.08:3276 0.09:3300 0.10:3340 INFO: Elapsed time: 14.5 s INFO: Finished crux q-ranker. INFO: Return Code:0